I assume you have conflicting config here because of this:
How app directory names affect precedence
Note: For most practical purposes, the information in this subsection probably won't matter, but it might prove useful if you need to force a certain order of evaluation or for troubleshooting.
To determine priority among the collection of apps directories, Splunk uses ASCII sort order. Files in an apps directory named "A" have a higher priority than files in an apps directory named "B", and so on. Also, all apps starting with an uppercase letter have precedence over any apps starting with a lowercase letter, due to ASCII sort order. ("A" has precedence over "Z", but "Z" has precedence over "a", for example.)
In addition, numbered directories have a higher priority than alphabetical directories and are evaluated in lexicographic, not numerical, order. For example, in descending order of precedence:
$SPLUNK_HOME/etc/apps/myapp1
$SPLUNK_HOME/etc/apps/myapp10
$SPLUNK_HOME/etc/apps/myapp2
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