Nelsonbarringer,
The regexes on the monitor header may not do what you want to do. The asterisk (*) matches anything in a single path segment while "..." will recurse through directories.
I think you'd be better off using whitelist and blacklist under your monitor stanzas.
Check here for more info on white/blacklisting: http://docs.splunk.com/Documentation/Splunk/latest/admin/Inputsconf
Hope this helps.
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