Hi David,
To monitor end user experience, the AppDynamics agent injects JavaScript right after the opening <HEAD> tag.
We have different styles of EUM injection, like Automatic and manual injections which can be applied depending on the application requirement. For example;
->If your application runs on a Jasper platform, you can configure automatic injection.
->If your application does not run in a Jasper-supported framework or if for some other reason automatic injection is not working, you can use manual injection styles.
Please find the doc link below for a better clarity on this :
https://docs.appdynamics.com/display/PRO45/Set+Up+and+Access+Browser+RUM#SetUpandAccessBrowserRUM-In...
https://docs.appdynamics.com/display/PRO45/Configure+the+JavaScript+Agent
By default jira bundles tomcat which uses jasper framework, so automatic injection should work. We suggest you try this out on a test environment first.
Please feel free to write back to us for any further assistance.
Thanks & Regards,
Chitra
