Check out the reply from peter.payne that starts with this: "So what I keep forgetting (because this is the first application I've ever encountered this behaviour) is that all AppDynamics agents (Java, Machine, and Apache) assume that the configuration files are located in a directory relative to the location of the agent (or, in this case, SDK) binary (be it a .jar or .so)."
He then goes on to explain his solution. Please let me know if this helps.
