A bit late but posting since I haven't seen this info anywhere yet. I had a support case open for similar symptoms since going to 8.2.6. I had already taken extensive steps to rule out legitimate IO saturation and did not feel comfortable adjusting the threshold of the indicator because of potential false negatives. The tl;dr in my case was that it is a known issue that is fixed in the 9.0.1 release. 2022-07-14 SPL-225807, SPL-219749 Indicator 'ingestion_latency_gap_multiplier' exceeded configured value. Being unsatisfied with the issue description not being precise enough, I kept probing the support engineer until I got sufficient explanation that it would be applicable. The way ingestion latency is detected is that tracker.log file gets generated on the server periodically in $SPLUNK_HOME/var/spool/splunk. It will contain a dummy event with a timestamp that is pulled from system now time. That dummy event is used to generate metrics that are used in the health indicator reports and are logged to internal indexes. This would be the most reliable way to detect indexing latency. Apparently there was a bug in the code that calculates the latency that is documented to be fixed in the above issue. I watched and inspected the tracker.log files as they were being generated and quickly got bored, but never saw any timestamp that was inaccurate. So I'll take Splunk's word that the issue should be fixed in the latest release for now.
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