Apps are a collection of dashboards, saved searches, and configurations for Splunk.
You can certainly fork an app and customize it to your own needs (assuming that the app EULA allows such activity)
All of your apps are located in the $SPLUNK_HOME/etc/apps/
The subfolders in those directories contain the configurations and dashboards that make up an app.
The xml for dashboards can be found in $APP_HOME/default/data/ui/views
The configuration files contained in the app are found in $APP_HOME/default/
If you make changes to configurations it is best to write those changes not to the default folder but to the local folder which should have the same structure within it
If you don't want to mess with the conf files directly, your best bet is to create a copy of the app.
Ex. * cp $SPLUNK_HOME/etc/apps/YOURAPP $SPLUNK_HOME/etc/apps/YOURAPP_copy*
Then go to the copy in the ui and make your changes to it there. If you like your changes and it is stable, then you can use that app instead of the original.
For more see: http://dev.splunk.com/view/get-started/SP-CAAAESC
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