Currently, Linux x64/arm, Windows_x64, MacOS enterprise and UF packages are built from the same repo and have the same commit hashes. Linux s390x/ppcle, Windows 32-bit, FreeBSD, Solaris and AIX UFs, are built from a different repo. I understand the pain though, we didn't do the recent split lightly and we'll re-evaluate it at some point.
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The answer finally turned out to be updating our Java configuration. We had originally been using the Java runtime included with the operating system. We had to install the latest Java 7 SE runtime from Oracle and redirect DBX to use that by updating the $SPLUNK/etc/apps/dbx/local/java.conf file.
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