Some logs were missed by splunk in search index

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While using splunk, we are missing some events in search index. There is no repeated behavior of this kind but they are missing very rarely causing to create in-correct details.

We get beginning of a process logs but we are not receiving the ended process logs, so splunk is showing in-correct details about run time of some process. The same process was properly logged 99% of the time but missing 1%.

Is there a way to fix this issue?

Splunk version: 6.4.3

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